Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Filters

Publication:
MLST profiles:
Ribosomal MLST pro…
Include old record versions

Add filter: Add

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Annotation status
Sequence bin
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

3,145 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields							MLST
id	isolate	aliases	variety serovar	country	year	source	glp	gmk	ilv	pta	pur	pyc	tpi	ST
2458	BC112			Italy	2017	blood	91	8	14	11	2	36	7	2096
2653	E33L	CP000001; GCA_000011625.1; NC_006274; PRJNA12468; PRJNA58103; SAMN02598269	cereus	Namibia	1996	other	115	124	119	116	119	108	88	908
2654	ATCC 10987	AE017194; GCA_000008005.1; NC_003909; PRJNA57673; PRJNA74; SAMN02603979	cereus	Canada		milk products	5	4	3	4	15	6	16	32
2655	ATCC 14579	AE016877; GCA_000007825.1; NC_004722; PRJNA384; PRJNA57975; SAMN02603340	cereus	Unknown			13	125	8	11	11	12	169	921
2656	03BB102	CP001407; GCA_000022505.1; NC_012472; PRJNA31307; PRJNA59299; SAMN02603930	cereus	USA		blood	34	1	32	1	33	37	24	11
2657	AH820	CP001283; GCA_000021785.1; NC_011773; PRJNA17711; PRJNA58751; SAMN02604057	cereus	Norway	1995		65	1	56	1	1	53	24	460
2658	G9842	CP001186; GCA_000021305.1; NC_011772; PRJNA17733; PRJNA58759; SAMN02604060	cereus	USA	1996	faeces	15	7	7	2	7	26	13	56
2659	B4264	CP001176; GCA_000021205.1; NC_011725; PRJNA17731; PRJNA58757; SAMN02604059	cereus	Unknown	1969	blood	14	8	40	19	2	17	17	89
2660	AH187	CP001177; GCA_000021225.1; NC_011658; PRJNA17715; PRJNA58753; SAMN02604058	cereus	UK	1972		3	2	31	5	16	3	4	26
2661	Q1	CP000227; GCA_000013065.1; NC_011969; PRJNA16220; PRJNA58529; SAMN02603603	cereus	China		environmental	3	2	21	17	36	3	4	266
2662	Ames Ancestor	AE017334; GCA_000008445.1; NC_007530; PRJNA10784; PRJNA58083; SAMN02603433	anthracis	USA	1979		1	1	1	1	1	1	1	1
2663	A0248	CP001598; GCA_000022865.1; NC_012659; PRJNA33543; PRJNA59385; SAMN02603932	anthracis	USA			1	1	1	1	1	1	1	1
2664	Ames	AE016879; GCA_000007845.1; NC_003997; PRJNA309; PRJNA57909; SAMN02603432	anthracis	USA	1981		1	1	1	1	1	1	1	1
2665	CDC 684	CP001215; GCA_000021445.1; NC_012581; PRJNA31329; PRJNA59303; SAMN02603931	anthracis	USA	1964		1	1	1	1	1	1	1	1
2666	R309803	ACLY01; GCA_000160995.1; NZ_ACLY00000000; PRJNA29647; PRJNA55153; SAMN00726683; SRS265282	cereus	UK			42	27	37	41	40	42	32	74
2667	Rock1-15	ACMH01; GCA_000161175.1; NZ_ACMH01000000; PRJNA29675; PRJNA55181; SAMN00727711; SRS265371	cereus	USA		soil	13	8	9	28	9	12	8	511
2668	Rock1-3	ACMG01; GCA_000161155.1; PRJNA29673; PRJNA55179; SAMN00727650; SRS265337	cereus	USA		soil	43	26	35	42	39	41	30	111
2670	Rock3-29	ACMJ01; GCA_000161215.1; NZ_ACMJ01000000; PRJNA29679; PRJNA55185; SAMN00727649; SRS265336	cereus	USA		soil	43	26	35	42	39	41	63	223
2672	Rock4-18	ACMN01; GCA_000161295.1; NZ_ACMN01000000; PRJNA29687; PRJNA55193; SAMN00727648; SRS265335	cereus	USA		soil	87	26	78	42	39	41	30	505
2673	Rock4-2	ACMM01; GCA_000161275.1; NZ_ACMM00000000; PRJNA29685; PRJNA55191; SAMN00727714; SRS265374	cereus	USA		soil	7	8	14	26	138	50	7	501
2674	DSM2048	ACMU01; GCA_000003925.1; NZ_ACMU00000000; PRJNA29701; PRJNA55207; SAMN00727646; SRS265333	mycoides	Unknown		soil	25	10	22	53	57	23	44	116
2676	Rock3-17	ACMW01; GCA_000161435.1; NZ_ACMW01000000; PRJNA29705; PRJNA55211; SAMN00727643; SRS265330	pseudomycoides	USA		soil	98	13	84	84	84	73	74	259
2677	DSM12442	ACMX01; GCA_000161455.1; NZ_ACMX00000000; PRJNA29707; PRJNA55213; SAMN00727631; SRS265318	pseudomycoides	USA		soil	63	13	58	23	25	44	35	83
2678	KBAB4	GCA_000018825.1; NC_010184; PRJNA13623; PRJNA58315; SAMN00623031; SRS211699	mycoides	Unknown			18	10	79	36	77	70	18	958
2679	A0174	ABLT01; GCA_000182055.1; PRJNA27921; PRJNA55003; SAMN02470265	anthracis	Canada	1995			1	1	1	1	1	1

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

linked to any publication
not linked to any publication
Barker et al. 2005 FEMS Microbiol Lett 245:179-84
Benintende et al. 2000 Curr Microbiol 41:396-401
Bizzarri et al. 2008 J Appl Microbiol 104:60-9
Bizzarri et al. 2008 Microb Ecol 55:619-25
Cachat et al. 2008 FEMS Microbiol Lett 285:220-6
Cardazzo et al. 2008 Appl Environ Microbiol 74:850-60
Cerar Kišek et al. 2021 Arch Microbiol 203:3209-3217
Collier et al. 2005 FEMS Microbiol Ecol 54:417-25
Didelot et al. 2009 Syst Appl Microbiol 32:81-90
Dwyer et al. 2004 BMC Genomics 5:15
Ezzell et al. 1990 J Clin Microbiol 28:223-31
Ghelardi et al. 2007 Microbes Infect 9:591-8
Griffiths 1977 Biochem Soc Trans 5:1283-5
Han et al. 2006 J Bacteriol 188:3382-90
Helgason et al. 1998 Curr Microbiol 37:80-7
Hernandez et al. 1998 J Clin Microbiol 36:2138-9
Hill et al. 2004 Appl Environ Microbiol 70:1068-80
Hoffmaster et al. 2004 Proc Natl Acad Sci U S A 101:8449-54
Hoffmaster et al. 2006 J Clin Microbiol 44:3352-60
Hoffmaster et al. 2008 BMC Microbiol 8:191
Irenge et al. 2020 Microbiol Resour Announc 9:
Ivanova et al. 2003 Nature 423:87-91
Jiménez et al. 2013 Genome Announc 1:
Jiménez et al. 2013 Syst Appl Microbiol 36:383-91
Jung et al. 2010 J Microbiol 48:867-71
Keim et al. 2000 J Bacteriol 182:2928-36
Kim et al. 2002 FEMS Microbiol Lett 207:21-7
Kim et al. 2005 FEMS Immunol Med Microbiol 43:301-10
Kim et al. 2005 Yale J Biol Med 78:1-14
Klee et al. 2006 J Bacteriol 188:5333-44
Klee et al. 2010 PLoS One 5:e10986
Ko et al. 2004 Infect Immun 72:5253-61
Lechner et al. 1998 Int J Syst Bacteriol 48 Pt 4:1373-82
Leendertz et al. 2004 Nature 430:451-2
Leendertz et al. 2006 Am J Primatol 68:928-33
Leendertz et al. 2006 PLoS Pathog 2:e8
Leoff et al. 2008 J Bacteriol 190:112-21
Marston et al. 2006 BMC Microbiol 6:22
Nakamura 1998 Int J Syst Bacteriol 48 Pt 3:1031-5
Pirttijärvi et al. 1999 Syst Appl Microbiol 22:133-44
Priest et al. 1988 J Gen Microbiol 134:1847-82
Priest et al. 2004 J Bacteriol 186:7959-70
Prüss et al. 1999 Appl Environ Microbiol 65:5436-42
Qi et al. 2001 Appl Environ Microbiol 67:3720-7
Radnedge et al. 2003 Appl Environ Microbiol 69:2755-64
Ramisse et al. 1999 J Appl Microbiol 87:224-8
Rasko et al. 2004 Nucleic Acids Res 32:977-88
Raymond et al. 2008 J Invertebr Pathol 98:307-13
Read et al. 2003 Nature 423:81-6
Turnbull et al. 2004 J Clin Microbiol 42:3626-34
Vassileva et al. 2006 Microbiol Immunol 50:743-9
Vassileva et al. 2007 J Clin Microbiol 45:1274-7