Codon usage analysis
This plugin will analyse the codon usage for individual loci and overall for an isolate. Only loci that have a corresponding database containing sequences, or with sequences tagged, can be included. It is important to note that correct identification of codons can only be achieved for loci for which the correct ORF has been set (if they are not in reading frame 1). Partial sequnces from the sequence bin will not be analysed. Please check the loci that you would like to include. Output is limited to 6000 records.