Full information on isolate ANC 4052 (id:2116)
Projects
This isolate is a member of the following project:
- whole genome MLST
- Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website
Provenance/primary metadata
- id
- 2116
- isolate
- ANC 4052
- country
- USA
- continent
- North America
- species
- Acinetobacter lactucae
- species id method
- rpoB gene sequence
- source
- blood
- Genbank accession
- APQO00000000.1 www.ncbi.nlm.nih.gov
- comments
- 1995-2002
Tracking
- sender
- Alexandr Nemec, National Institute of Public Heatlh, Prague, Czech Republic
- curator
- Auto Tagger
- update history
- 17 updates show details
- date entered
- 2014-07-11
- datestamp
- 2023-09-21
Publication (1)
- Marí-Almirall M, Cosgaya C, Higgins PG, Van Assche A, Telli M, Huys G, Lievens B, Seifert H, Dijkshoorn L, Roca I, Vila J (2017). MALDI-TOF/MS identification of species from the Acinetobacter baumannii (Ab) group revisited: inclusion of the novel A. seifertii and A. dijkshoorniae species. Clin Microbiol Infect 23:210.e1-210.e9
Sequence bin
- contigs
- 8
- total length
- 3,953,097 bp
- max length
- 1,681,232 bp
- mean length
- 494,138 bp
- N50
- 1,452,189
- L50
- 2
- N90
- 277,481
- L90
- 4
- N95
- 112,215
- L95
- 5
- %GC
- 38.85
- Ns
- 0
- gaps
- 0
- loci tagged
- 581
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 7 | 100 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
Schemes and loci
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Tools
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