Full information on isolate D1279779 (id:2241)

Projects

This isolate is a member of the following project:

whole genome MLST
Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website

Provenance/primary metadata

id
2241
isolate
D1279779
country
Australia
continent
Oceania
year
2011
species
Acinetobacter baumannii
species id method
unknown
Genbank accession
NC_020547.2 www.ncbi.nlm.nih.gov

Antimicrobial resistance

OXA class
Oxacillinases (Class D)
OXA betalactamase
blaOXA-51-like [OXA-180]

Tracking

sender
Raffaele Zarrilli, Universita di Napoli Federico II
curator
Auto Tagger
update history
31 updates show details
date entered
2015-02-26
datestamp
2023-06-27

Sequence bin

contigs
1
length
3,704,284 bp
%GC
39.00
Ns
0
gaps
0
loci tagged
2,811

Show sequence bin

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST (Oxford)77100
MLST (Pasteur)77100
Ribosomal MLST5353100
A. baumannii cgMLST2133209598

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Acinetobacter baumannii Proteobacteria > Gammaproteobacteria > Moraxellales > Moraxellaceae > Acinetobacter > Acinetobacter baumannii 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Aba_cgc_200A. baumannii cgMLSTSingle-linkage200experimental2 (10 isolates)
Aba_cgc_100A. baumannii cgMLSTSingle-linkage100experimental2 (10 isolates)
Aba_cgc_50A. baumannii cgMLSTSingle-linkage50experimental2 (10 isolates)
Aba_cgc_25A. baumannii cgMLSTSingle-linkage25experimental2 (2 isolates)
Aba_cgc_200A. baumannii cgMLSTSingle-linkage200experimental2 (10 isolates)
Aba_cgc_100A. baumannii cgMLSTSingle-linkage100experimental2 (10 isolates)
Aba_cgc_50A. baumannii cgMLSTSingle-linkage50experimental2 (10 isolates)
Aba_cgc_25A. baumannii cgMLSTSingle-linkage25experimental2 (2 isolates)

Schemes and loci

Tools

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