Full information on isolate NIPH 70 (id:2242)
Projects
This isolate is a member of the following project:
- whole genome MLST
- Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website
Provenance/primary metadata
- id
- 2242
- isolate
- NIPH 70
- country
- Czech Republic
- continent
- Europe
- year
- 1992
- species
- Acinetobacter baumannii
- species id method
- unknown
- source
- upper respiratory tract
- Genbank accession
- APRC00000000.1 www.ncbi.nlm.nih.gov
Antimicrobial resistance
- OXA class
- Oxacillinases (Class D)
- OXA betalactamase
- blaOXA-51-like [OXA-259]
Tracking
- sender
- Raffaele Zarrilli, Universita di Napoli Federico II
- curator
- Auto Tagger
- update history
- 33 updates show details
- date entered
- 2015-02-26
- datestamp
- 2023-04-27
Sequence bin
- contigs
- 57
- total length
- 3,926,921 bp
- max length
- 663,535 bp
- mean length
- 68,894 bp
- N50
- 253,869
- L50
- 5
- N90
- 51,085
- L90
- 15
- N95
- 24,420
- L95
- 20
- %GC
- 38.94
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,797
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 7 | 100 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| A. baumannii cgMLST | 2133 | 2118 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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Analysis: