Full information on isolate 541915 (id:2243)
Projects
This isolate is a member of the following project:
- whole genome MLST
- Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website
Provenance/primary metadata
- id
- 2243
- isolate
- 541915
- country
- USA
- continent
- North America
- species
- Acinetobacter baumannii
- species id method
- unknown
- source
- sputum
- Genbank accession
- JFXQ00000000.1 www.ncbi.nlm.nih.gov
Tracking
- sender
- Raffaele Zarrilli, Universita di Napoli Federico II
- curator
- Auto Tagger
- update history
- 34 updates show details
- date entered
- 2015-02-26
- datestamp
- 2023-06-27
Sequence bin
- contigs
- 92
- total length
- 4,148,609 bp
- max length
- 339,964 bp
- mean length
- 45,094 bp
- N50
- 117,542
- L50
- 11
- N90
- 30,655
- L90
- 41
- N95
- 25,996
- L95
- 48
- %GC
- 39.17
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,592
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 7 | 100 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| A. baumannii cgMLST | 2133 | 2124 | 99 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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Analysis: