Full information on isolate NIPH 527 (id:2247)
Projects
This isolate is a member of the following project:
- whole genome MLST
- Analysis of the population structure of Acinetobacter species in the Acinetobacter calcoaceticus-baumannii (Acb) complex obtained from publicly-available Acinetobacter genomes using the Acinetobacter baumannii PubMLST website
Provenance/primary metadata
- id
- 2247
- isolate
- NIPH 527
- country
- The Netherlands
- continent
- Europe
- year
- 1984
- species
- Acinetobacter baumannii
- species id method
- unknown
- source
- urine
- Genbank accession
- APQW00000000.1 www.ncbi.nlm.nih.gov
Antimicrobial resistance
- OXA class
- Oxacillinases (Class D)
- OXA betalactamase
- blaOXA-51-like [OXA-69]
Tracking
- sender
- Raffaele Zarrilli, Universita di Napoli Federico II
- curator
- Auto Tagger
- update history
- 29 updates show details
- date entered
- 2015-02-26
- datestamp
- 2023-08-27
Sequence bin
- contigs
- 31
- total length
- 4,152,121 bp
- max length
- 1,426,931 bp
- mean length
- 133,940 bp
- N50
- 412,856
- L50
- 3
- N90
- 151,167
- L90
- 10
- N95
- 43,189
- L95
- 13
- %GC
- 39.15
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,926
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST (Oxford) | 7 | 7 | 100 | |
| MLST (Pasteur) | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| A. baumannii cgMLST | 2133 | 2130 | 99 | |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Aba_cgc_200 | A. baumannii cgMLST | Single-linkage | 200 | experimental | 5 (101 isolates) |
| Aba_cgc_100 | A. baumannii cgMLST | Single-linkage | 100 | experimental | 5 (44 isolates) |
| Aba_cgc_50 | A. baumannii cgMLST | Single-linkage | 50 | experimental | 18 (21 isolates) |
| Aba_cgc_25 | A. baumannii cgMLST | Single-linkage | 25 | experimental | 7 (2 isolates) |
| Aba_cgc_200 | A. baumannii cgMLST | Single-linkage | 200 | experimental | 5 (101 isolates) |
| Aba_cgc_100 | A. baumannii cgMLST | Single-linkage | 100 | experimental | 5 (44 isolates) |
| Aba_cgc_50 | A. baumannii cgMLST | Single-linkage | 50 | experimental | 18 (21 isolates) |
| Aba_cgc_25 | A. baumannii cgMLST | Single-linkage | 25 | experimental | 7 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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