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Full information on isolate L3_0767 (id:12)

Provenance/primary metadata

id
12
isolate
L3_0767
alias
NCTC 10245, China5, ATCC 10399
country
China
continent
Asia
year
1972
source
animal
animal source
horse
disease
glanders

Tracking

sender
Sandra APPELT, Robert Koch Institute
curator
Auto Tagger
update history
2 updates show details
date entered
2022-08-11
datestamp
2022-08-11

Publication (1)

  • Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499

Sequence bin

contigs
194
total length
5,691,560 bp
max length
133,769 bp
mean length
29,338 bp
N50
53,479
L50
36
N90
17,812
L90
106
N95
11,711
L95
126
%GC
68.69
Ns
2782
gaps
26
loci tagged
3,299

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia mallei Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia mallei 100%

Analysis performed: 2023-08-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bm_cgc_50cgMLSTSingle-linkage50experimental7 (6 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental7 (5 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental10 (5 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental10 (4 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental10 (4 isolates)
Bm_cgc_50cgMLSTSingle-linkage50experimental7 (6 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental7 (5 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental10 (5 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental10 (4 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental10 (4 isolates)

Schemes and loci

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