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Full information on isolate L3_0768 (id:13)

Provenance/primary metadata

id
13
isolate
L3_0768
alias
ATCC 15310, NCTC 10230, IVAN
country
Hungary
continent
Europe
year
1961
source
animal
animal source
horse
disease
glanders

Tracking

sender
Sandra APPELT, Robert Koch Institute
curator
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update history
2 updates show details
date entered
2022-08-11
datestamp
2022-08-11

Publication (1)

  • Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499

Sequence bin

contigs
179
total length
5,531,552 bp
max length
146,984 bp
mean length
30,903 bp
N50
54,711
L50
34
N90
19,979
L90
99
N95
12,958
L95
117
%GC
68.70
Ns
5284
gaps
48
loci tagged
3,283

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia mallei Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia mallei 100%

Analysis performed: 2023-08-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bm_cgc_50cgMLSTSingle-linkage50experimental8 (4 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental8 (4 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental11 (4 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental11 (4 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental11 (4 isolates)
Bm_cgc_50cgMLSTSingle-linkage50experimental8 (4 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental8 (4 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental11 (4 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental11 (4 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental11 (4 isolates)

Schemes and loci

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