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Full information on isolate L3_2960 (id:19)

Provenance/primary metadata

id
19
isolate
L3_2960
alias
Dubai 8, No.1 v. D2267/04
country
United Arab Emirates
continent
Asia
year
2004
source
animal
animal source
horse
disease
glanders

Tracking

sender
Sandra APPELT, Robert Koch Institute
curator
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update history
2 updates show details
date entered
2022-08-11
datestamp
2022-08-11

Publication (1)

  • Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499

Sequence bin

contigs
173
total length
5,617,640 bp
max length
147,579 bp
mean length
32,472 bp
N50
60,330
L50
35
N90
19,020
L90
100
N95
13,167
L95
118
%GC
68.70
Ns
3647
gaps
31
loci tagged
3,292

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia mallei Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia mallei 100%

Analysis performed: 2023-08-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)

Schemes and loci

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