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Full information on isolate L3_2962 (id:20)

Provenance/primary metadata

id
20
isolate
L3_2962
alias
Dubai 10, No.1 v. D2268.1/04
country
United Arab Emirates
continent
Asia
year
2004
source
animal
animal source
horse
disease
glanders

Tracking

sender
Sandra APPELT, Robert Koch Institute
curator
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update history
2 updates show details
date entered
2022-08-11
datestamp
2022-08-11

Publication (1)

  • Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499

Sequence bin

contigs
197
total length
5,610,839 bp
max length
148,063 bp
mean length
28,482 bp
N50
57,007
L50
36
N90
16,845
L90
105
N95
10,954
L95
126
%GC
68.70
Ns
3823
gaps
35
loci tagged
3,279

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia mallei Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia mallei 100%

Analysis performed: 2023-08-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)

Schemes and loci

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