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Full information on isolate L3_2966 (id:21)

Provenance/primary metadata

id
21
isolate
L3_2966
alias
Dubai 14, No.1 v. D2567/04
country
United Arab Emirates
continent
Asia
year
2004
source
animal
animal source
horse
disease
glanders

Tracking

sender
Sandra APPELT, Robert Koch Institute
curator
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update history
2 updates show details
date entered
2022-08-11
datestamp
2022-08-11

Publication (1)

  • Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499

Sequence bin

contigs
184
total length
5,605,501 bp
max length
148,046 bp
mean length
30,465 bp
N50
64,079
L50
32
N90
18,495
L90
96
N95
12,966
L95
114
%GC
68.71
Ns
5890
gaps
43
loci tagged
3,287

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia mallei Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia mallei 100%

Analysis performed: 2023-08-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)

Schemes and loci

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