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Full information on isolate L3_2967 (id:22)

Provenance/primary metadata

id
22
isolate
L3_2967
alias
Dubai 15, No.2 v. D2567/04
country
United Arab Emirates
continent
Asia
year
2004
source
animal
animal source
horse
disease
glanders

Tracking

sender
Sandra APPELT, Robert Koch Institute
curator
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update history
2 updates show details
date entered
2022-08-11
datestamp
2022-08-11

Publication (1)

  • Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499

Sequence bin

contigs
186
total length
5,611,439 bp
max length
148,253 bp
mean length
30,170 bp
N50
59,842
L50
33
N90
17,752
L90
100
N95
12,712
L95
119
%GC
68.71
Ns
4213
gaps
36
loci tagged
3,282

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia mallei Pseudomonadota > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia mallei 100%

Analysis performed: 2023-08-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)
Bm_cgc_50cgMLSTSingle-linkage50experimental9 (24 isolates)
Bm_cgc_25cgMLSTSingle-linkage25experimental9 (24 isolates)
Bm_cgc_10cgMLSTSingle-linkage10experimental12 (18 isolates)
Bm_cgc_5cgMLSTSingle-linkage5experimental12 (18 isolates)
Bm_cgc_3cgMLSTSingle-linkage3experimental12 (13 isolates)

Schemes and loci

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