Full information on isolate L3_2968 (id:23)
Provenance/primary metadata
- id
- 23
- isolate
- L3_2968
- alias
- Dubai 16, No.1 v. D2700/04, Guinea pig
- country
- United Arab Emirates
- continent
- Asia
- year
- 2004
- source
- animal
- animal source
- horse
- disease
- glanders
Tracking
- sender
- Sandra APPELT, Robert Koch Institute
- curator
- Auto Tagger
- update history
- 2 updates show details
- date entered
- 2022-08-11
- datestamp
- 2022-08-11
Publication (1)
- Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499
Sequence bin
- contigs
- 177
- total length
- 5,604,105 bp
- max length
- 147,959 bp
- mean length
- 31,662 bp
- N50
- 62,339
- L50
- 31
- N90
- 19,282
- L90
- 95
- N95
- 12,842
- L95
- 113
- %GC
- 68.71
- Ns
- 2900
- gaps
- 29
- loci tagged
- 3,296
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bm_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 9 (24 isolates) |
| Bm_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 9 (24 isolates) |
| Bm_cgc_10 | cgMLST | Single-linkage | 10 | experimental | 12 (18 isolates) |
| Bm_cgc_5 | cgMLST | Single-linkage | 5 | experimental | 12 (18 isolates) |
| Bm_cgc_3 | cgMLST | Single-linkage | 3 | experimental | 12 (13 isolates) |
| Bm_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 9 (24 isolates) |
| Bm_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 9 (24 isolates) |
| Bm_cgc_10 | cgMLST | Single-linkage | 10 | experimental | 12 (18 isolates) |
| Bm_cgc_5 | cgMLST | Single-linkage | 5 | experimental | 12 (18 isolates) |
| Bm_cgc_3 | cgMLST | Single-linkage | 3 | experimental | 12 (13 isolates) |
Schemes and loci
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