Full information on isolate L3_0580 (id:6)
Provenance/primary metadata
- id
- 6
- isolate
- L3_0580
- alias
- Mukteswar
- country
- India
- continent
- Asia
- year
- 1996
- source
- animal
- animal source
- horse
- disease
- glanders
Tracking
- sender
- Sandra APPELT, Robert Koch Institute
- curator
- Auto Tagger
- update history
- 3 updates show details
- date entered
- 2022-08-11
- datestamp
- 2022-10-06
Publication (1)
- Appelt S, Rohleder AM, Jacob D, von Buttlar H, Georgi E, Mueller K, Wernery U, Kinne J, Joseph M, Jose SV, Scholz HC (2022). Genetic diversity and spatial distribution of Burkholderia mallei by core genome-based multilocus sequence typing analysis. PLoS One 17:e0270499
Sequence bin
- contigs
- 194
- total length
- 5,634,693 bp
- max length
- 148,041 bp
- mean length
- 29,045 bp
- N50
- 64,353
- L50
- 33
- N90
- 18,773
- L90
- 95
- N95
- 12,939
- L95
- 114
- %GC
- 68.67
- Ns
- 3836
- gaps
- 44
- loci tagged
- 3,260
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bm_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 3 (3 isolates) |
| Bm_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 3 (3 isolates) |
| Bm_cgc_10 | cgMLST | Single-linkage | 10 | experimental | 4 (3 isolates) |
| Bm_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 3 (3 isolates) |
| Bm_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 3 (3 isolates) |
| Bm_cgc_10 | cgMLST | Single-linkage | 10 | experimental | 4 (3 isolates) |
| Bm_cgc_5 | cgMLST | Single-linkage | 5 | experimental | 4 (1 isolate) |
| Bm_cgc_3 | cgMLST | Single-linkage | 3 | experimental | 4 (1 isolate) |
Schemes and loci
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