Full information on isolate Hiratsuka_wgs (id:2704)
Provenance/primary metadata
- id
- 2704
- isolate
- Hiratsuka_wgs
- country
- Japan
- continent
- Asia
- region
- Niijata
- species
- Borrelia bavariensis
- year
- 2008
- source
- human
- detailed source
- EM
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 15 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 43
- total length
- 1,361,041 bp
- max length
- 464,141 bp
- mean length
- 31,653 bp
- N50
- 222,845
- L50
- 2
- N90
- 14,489
- L90
- 17
- N95
- 9,786
- L95
- 22
- %GC
- 28.02
- Ns
- 0
- gaps
- 0
- loci tagged
- 807
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: