Full information on isolate J-15_wgs (id:2706)
Provenance/primary metadata
- id
- 2706
- isolate
- J-15_wgs
- country
- Japan
- continent
- Asia
- species
- Borrelia bavariensis
- source
- human
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 48
- total length
- 1,283,014 bp
- max length
- 171,203 bp
- mean length
- 26,730 bp
- N50
- 86,295
- L50
- 6
- N90
- 17,829
- L90
- 19
- N95
- 4,949
- L95
- 25
- %GC
- 27.80
- Ns
- 0
- gaps
- 0
- loci tagged
- 805
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: