Full information on isolate N346_wgs (id:2710)

Provenance/primary metadata

id
2710
isolate
N346_wgs
country
Japan
continent
Asia
region
Hokkaido
species
Borrelia bavariensis
source
tick
detailed source
Ixodes persulcatus
sender
Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
curator
Auto Tagger
update history
13 updates show details
date entered
2020-02-17
datestamp
2023-01-27

Sequence bin

contigs
42
total length
1,280,991 bp
max length
463,896 bp
mean length
30,500 bp
N50
222,974
L50
2
N90
16,675
L90
12
N95
9,688
L95
17
%GC
27.77
Ns
0
gaps
0
loci tagged
799

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Borreliella garinii Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii 100%

Analysis performed: 2022-09-01

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: