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Full information on isolate M6280 (id:12)

Provenance/primary metadata

id
12
isolate
M6280
country
Sweden
continent
Europe
year
1997

AMR prediction

azithromycin mic
=0.004 μg/mL
moxifloxacin mic
=0.063 μg/mL
doxycycline mic
=0.063 μg/mL
ciprofloxacin mic
=1 μg/mL
erythromycin mic
=0.063 μg/mL

Tracking

ENA run accession
ERR486836 www.ebi.ac.uk
sender
Jolinda de Korne
curator
Jolinda de Korne, GGD Amsterdam (E-mail: jolindadekorne@gmail.com)
update history
25 updates show details
date entered
2022-03-31
datestamp
2022-04-13

Publication (1)

  • Fookes MC, Hadfield J, Harris S, Parmar S, Unemo M, Jensen JS, Thomson NR (2017). Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC Genomics 18:993

Sequence bin

contigs
5
total length
578,887 bp
max length
314,106 bp
mean length
115,778 bp
N50
314,106
L50
1
N90
262,625
L90
2
N95
262,625
L95
2
%GC
31.64
Ns
0
gaps
0
loci tagged
573

Show sequence bin

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Ribosomal MLST5353100

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycoplasmoides genitalium Mycoplasmatota > [unclassified] > Mycoplasmoidales > Metamycoplasmataceae > Mycoplasmoides > Mycoplasmoides genitalium 98%

Analysis performed: 2023-04-05

Schemes and loci

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