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Full information on isolate M6328 (id:22)

Provenance/primary metadata

id
22
isolate
M6328
country
Sweden
continent
Europe
year
1998

AMR prediction

azithromycin mic
=0.004 μg/mL
moxifloxacin mic
=0.125 μg/mL
doxycycline mic
=0.125 μg/mL
ciprofloxacin mic
=2 μg/mL
erythromycin mic
=0.125 μg/mL

Tracking

ENA run accession
ERR486839 www.ebi.ac.uk
sender
Jolinda de Korne
curator
Jolinda de Korne, GGD Amsterdam (E-mail: jolindadekorne@gmail.com)
update history
25 updates show details
date entered
2022-03-31
datestamp
2022-04-13

Publication (1)

  • Fookes MC, Hadfield J, Harris S, Parmar S, Unemo M, Jensen JS, Thomson NR (2017). Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC Genomics 18:993

Sequence bin

contigs
4
total length
584,087 bp
max length
579,941 bp
mean length
146,022 bp
N50
579,941
L50
1
N90
579,941
L90
1
N95
579,941
L95
1
%GC
31.79
Ns
0
gaps
0
loci tagged
573

Show sequence bin

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Ribosomal MLST5353100

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycoplasmoides genitalium Mycoplasmatota > [unclassified] > Mycoplasmoidales > Metamycoplasmataceae > Mycoplasmoides > Mycoplasmoides genitalium 84%

Analysis performed: 2023-04-05

Schemes and loci

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