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Full information on isolate M6593 (id:25)

Provenance/primary metadata

id
25
isolate
M6593
country
Norway
continent
Europe
year
2008

AMR prediction

azithromycin mic
=16 μg/mL
moxifloxacin mic
=0.125 μg/mL
doxycycline mic
=0.125 μg/mL
ciprofloxacin mic
=2 μg/mL
erythromycin mic
>16 μg/mL

Tracking

ENA run accession
ERR486827 www.ebi.ac.uk
sender
Jolinda de Korne
curator
Jolinda de Korne, GGD Amsterdam (E-mail: jolindadekorne@gmail.com)
update history
24 updates show details
date entered
2022-03-31
datestamp
2022-04-13

Publication (1)

  • Fookes MC, Hadfield J, Harris S, Parmar S, Unemo M, Jensen JS, Thomson NR (2017). Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. BMC Genomics 18:993

Sequence bin

contigs
3
total length
582,186 bp
max length
374,696 bp
mean length
194,062 bp
N50
374,696
L50
1
N90
206,955
L90
2
N95
206,955
L95
2
%GC
31.69
Ns
0
gaps
0
loci tagged
573

Show sequence bin

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
Ribosomal MLST5353100

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycoplasmoides genitalium Mycoplasmatota > [unclassified] > Mycoplasmoidales > Metamycoplasmataceae > Mycoplasmoides > Mycoplasmoides genitalium 100%

Analysis performed: 2023-04-05

Schemes and loci

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