Full information on isolate P125109 (id:10)
Provenance/primary metadata
- id
- 10
- isolate
- P125109
- aliases
- AM933172; NC_011294; PRJEA30687; PRJNA59247
- subspecies
- enterica
- serovar
- Enteritidis
- country
- UK
- continent
- Europe
- source
- clinical
- detailed source
- Outbreak of food-poisoning from poultry farm
Tracking
- rMLST database accession
- 79 pubmlst.org
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 11 updates show details
- date entered
- 2014-11-11
- datestamp
- 2021-07-07
Publication (1)
- Thomson NR, Clayton DJ, Windhorst D, Vernikos G, Davidson S, Churcher C, Quail MA, Stevens M, Jones MA, Watson M, Barron A, Layton A, Pickard D, Kingsley RA, Bignell A, Clark L, Harris B, Ormond D, Abdellah Z, Brooks K, Cherevach I, Chillingworth T, Woodward J, Norberczak H, Lord A, Arrowsmith C, Jagels K, Moule S, Mungall K, Sanders M, Whitehead S, Chabalgoity JA, Maskell D, Humphrey T, Roberts M, Barrow PA, Dougan G, Parkhill J (2008). Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Res 18:1624-37
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 9 (3218 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 10 (1521 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 10 (1513 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 10 (1206 isolates) |
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 9 (3218 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 10 (1521 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 10 (1513 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 10 (1206 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: