Full information on isolate CT_02021853 (id:11)

Provenance/primary metadata

id
11
isolate
CT_02021853
aliases
CP001144; NC_011205; PRJNA19467; PRJNA58917
subspecies
enterica
serovar
Dublin

Tracking

rMLST database accession
80 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
13 updates show details
date entered
2014-11-11
datestamp
2022-08-05

Sequence bin

contigs
1
length
4,842,908 bp
%GC
52.18
Ns
0
gaps
0
loci tagged
6,533

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2022-10-13

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental70 (102 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental11 (21 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental11 (9 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental70 (102 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental11 (21 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental11 (9 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental11 (1 isolate)

Schemes and loci

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