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Full information on isolate CVM19633 (id:12)

Provenance/primary metadata

id
12
isolate
CVM19633
aliases
CP001127; NC_011094; PRJNA19459; PRJNA58915
subspecies
enterica
serovar
Schwarzengrund

Tracking

rMLST database accession
81 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
13 updates show details
date entered
2014-11-11
datestamp
2021-07-07

Sequence bin

contigs
1
length
4,709,075 bp
%GC
52.17
Ns
0
gaps
0
loci tagged
6,553

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-03-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental11 (22 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental516 (22 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental12 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental12 (2 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental11 (22 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental516 (22 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental12 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental12 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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