Full information on isolate SL254 (id:13)

Provenance/primary metadata

id
13
isolate
SL254
aliases
CP001113; NC_011080; PRJNA18747; PRJNA58831
subspecies
enterica
serovar
Newport II

Tracking

rMLST database accession
82 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
11 updates show details
date entered
2014-11-11
datestamp
2021-07-07

Sequence bin

contigs
1
length
4,827,641 bp
%GC
52.22
Ns
0
gaps
0
loci tagged
6,599

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-03-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental12 (58 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental13 (43 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental13 (25 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental13 (23 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental12 (58 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental13 (43 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental13 (25 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental13 (23 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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