Full information on isolate sv 62:z4,z23:-- (id:15)

Provenance/primary metadata

id
15
isolate
sv 62:z4,z23:--
aliases
PRJNA13030; PRJNA58191
subspecies
arizonae
serovar
other
country
USA
continent
North America
year
1986
source
animal
detailed source
snake

Tracking

rMLST database accession
958 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
21 updates show details
date entered
2014-11-11
datestamp
2021-07-07

Sequence bin

contigs
1
length
4,600,800 bp
%GC
51.38
Ns
0
gaps
0
loci tagged
3,509

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-03-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental13 (76 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental644 (76 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental15 (18 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental15 (18 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental13 (76 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental644 (76 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental15 (18 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental15 (18 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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