Full information on isolate Hadar RI_05P066 (id:17)
Provenance/primary metadata
- id
- 17
- isolate
- Hadar RI_05P066
- aliases
- ABFG01; GCA_000171515.1; PRJNA20593; PRJNA54907; SAMN02415248
- subspecies
- enterica
- serovar
- Hadar
Tracking
- rMLST database accession
- 1699 pubmlst.org
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2014-11-21
- datestamp
- 2021-07-07
Sequence bin
- contigs
- 50
- total length
- 4,793,325 bp
- max length
- 776,389 bp
- mean length
- 95,867 bp
- N50
- 370,713
- L50
- 5
- N90
- 92,588
- L90
- 14
- N95
- 40,517
- L95
- 18
- %GC
- 52.27
- Ns
- 0
- gaps
- 0
- loci tagged
- 6,517
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 14 (38 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 15 (38 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 16 (38 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 16 (25 isolates) |
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 14 (38 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 15 (38 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 16 (38 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 16 (25 isolates) |
Schemes and loci
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