Full information on isolate CT18 (id:2)
Provenance/primary metadata
- id
- 2
- isolate
- CT18
- aliases
- AL513382; NC_003198; PRJNA236; PRJNA57793
- subspecies
- enterica
- serovar
- Typhi
Tracking
- rMLST database accession
- 71 pubmlst.org
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2014-11-11
- datestamp
- 2021-07-07
Publication (1)
- Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413:848-52
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 2 (3052 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 4 (2642 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 198 (180 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 2 (2 isolates) |
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 2 (3052 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 4 (2642 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 198 (180 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 2 (2 isolates) |
Schemes and loci
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