Full information on isolate Newport SL317 (id:22)
Provenance/primary metadata
- id
- 22
- isolate
- Newport SL317
- aliases
- ABEW01; GCA_000171415.1; PRJNA20047; PRJNA54855; SAMN02415246
- subspecies
- enterica
- serovar
- Newport III
Tracking
- rMLST database accession
- 1704 pubmlst.org
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 68 updates show details
- date entered
- 2014-11-21
- datestamp
- 2023-05-16
Sequence bin
- contigs
- 63
- total length
- 4,948,011 bp
- max length
- 741,259 bp
- mean length
- 78,540 bp
- N50
- 484,233
- L50
- 5
- N90
- 89,958
- L90
- 12
- N95
- 34,985
- L95
- 16
- %GC
- 52.10
- Ns
- 0
- gaps
- 0
- loci tagged
- 6,590
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 15 (17 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 16 (17 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 17 (16 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 17 (14 isolates) |
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | 15 (17 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | 16 (17 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | 17 (16 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | 17 (14 isolates) |
Schemes and loci
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