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Full information on isolate SC-B67 (id:3)

Provenance/primary metadata

id
3
isolate
SC-B67
aliases
AE017220; NC_006905; PRJNA58017; PRJNA9618
subspecies
enterica
serovar
Choleraesuis
source
clinical
detailed source
human

Tracking

rMLST database accession
72 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
72 updates show details
date entered
2014-11-11
datestamp
2023-05-16

Publication (1)

  • Chiu CH, Tang P, Chu C, Hu S, Bao Q, Yu J, Chou YY, Wang HS, Lee YS (2005). The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen. Nucleic Acids Res 33:1690-8

Sequence bin

contigs
1
length
4,755,700 bp
%GC
52.16
Ns
0
gaps
0
loci tagged
6,413

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-05-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental66 (40 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental3 (2 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental3 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental3 (2 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental66 (40 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental3 (2 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental3 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental3 (2 isolates)

Schemes and loci

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