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Full information on isolate Ty2 (id:4)

Provenance/primary metadata

id
4
isolate
Ty2
aliases
AE014613; NC_004631; PRJNA371; PRJNA57973
subspecies
enterica
serovar
Typhi

Tracking

rMLST database accession
73 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
14 updates show details
date entered
2014-11-11
datestamp
2021-07-07

Publication (1)

  • Deng W, Liou SR, Plunkett G, Mayhew GF, Rose DJ, Burland V, Kodoyianni V, Schwartz DC, Blattner FR (2003). Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J Bacteriol 185:2330-7

Sequence bin

contigs
1
length
4,791,961 bp
%GC
52.05
Ns
0
gaps
0
loci tagged
6,376

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Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-03-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental2 (3052 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental4 (2642 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental115 (1652 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental4 (3 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental2 (3052 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental4 (2642 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental115 (1652 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental4 (3 isolates)

Schemes and loci

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