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Full information on isolate RKS4594 (id:5)

Provenance/primary metadata

id
5
isolate
RKS4594
aliases
CP000857; NC_012125; PRJNA20993; PRJNA59063
subspecies
enterica
serovar
Paratyphi C

Tracking

rMLST database accession
74 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
15 updates show details
date entered
2014-11-11
datestamp
2021-07-07

Publication (1)

  • Liu WQ, Feng Y, Wang Y, Zou QH, Chen F, Guo JT, Peng YH, Jin Y, Li YG, Hu SN, Johnston RN, Liu GR, Liu SL (2009). Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi. PLoS One 4:e4510

Sequence bin

contigs
1
length
4,833,080 bp
%GC
52.16
Ns
0
gaps
0
loci tagged
6,471

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-03-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental4 (27 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental5 (2 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental5 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental5 (2 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental4 (27 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental5 (2 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental5 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental5 (2 isolates)

Schemes and loci

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