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Full information on isolate SL483 (id:7)

Provenance/primary metadata

id
7
isolate
SL483
aliases
CP001138; NC_011149; PRJNA20063; PRJNA59431
subspecies
enterica
serovar
Agona

Tracking

rMLST database accession
76 pubmlst.org
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
15 updates show details
date entered
2014-11-11
datestamp
2021-07-07

Sequence bin

contigs
1
length
4,798,660 bp
%GC
52.08
Ns
0
gaps
0
loci tagged
6,561

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Salmonella enterica Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica 100%

Analysis performed: 2023-03-16

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental6 (263 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental7 (245 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental7 (237 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental7 (217 isolates)
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimental6 (263 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimental7 (245 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimental7 (237 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimental7 (217 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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