Burkholderia pseudomallei

Source of isolates submitted to the Burkholderia pseudomallei database

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The MLST scheme hosted in this database is described in Godoy et al. 2003 J Clin Microbiol 41:2068-2079.

Alternative primers for this scheme are described in Price et al. 2016 J Med Microbiol 65:992-7.

Database curated by Jessica.Webbmenzies.edu.au (Jessica Webb). We would like to thank Erin Price for her curation efforts over the years.

Primers

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.