Campylobacter jejuni/coli

Source of isolates submitted to the Campylobacter jejuni/coli database
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The MLST scheme hosted in this database is described in Dingle et al. 2001 J Clin Microbiol 39:14-23. The cgMLST scheme is described in Cody et al. 2017 J Clin Microbiol 55:2086-2097.

Database curated by frances.collesatbiology.ox.ac.uk (Frances Colles).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
2,491,749
Last updated:
2024-11-21

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
137,476
Last updated:
2024-11-21

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:
87,152
Last updated:
2024-11-21

Updates

We are very sad to announce the death of Alison Cody, our long-standing colleague and curator of this database, who passed away on 13 May, 2020 at Sobell House, Oxford. See more...