Chlamydiales spp.

Source of isolates submitted to the Chlamydiales spp. database

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These databases support three MLST schemes: one for the Chlamydiales order and two specific for C. trachomatis. These are described in Pannekoek et al. 2008 BMC Microbiol 8:42, Dean et al. 2009 Emerg Infect Dis 15:1385-94 and Herrmann et al. 2015 J Clin Microbiol 53:2172-9.

Database curated by y.pannekoekamc.uva.nl (Yvonne Pannekoek).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.