Brachyspira spp.

Source of isolates submitted to the Brachyspira spp. database

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This site contains schemes that cover the entire Brachyspira genus as well as a number of species-specific schemes.

The whole genus MLST scheme is described in Råsbäck et al. (2007) Microbiology 153:4074-4087.

Database curated by trepon74gmail.com (Tom La).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

Genomes:

Last updated:

2023-02-07