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PubMLST
Public databases for molecular typing
and microbial genome diversity

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  3. Orientia tsutsugamushi

Orientia tsutsugamushi

Source of isolates submitted to the Orientia tsutsugamushi database
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This MLST scheme was developed by Piengchan Sonthayanon and colleagues at Mahidol University, Thailand. It is described in Sonthayanon et al. 2010 PLoS Negl Trop Dis 4:e752.

Database curated by piengchanattropmedres.ac (Piengchan Sonthayanon) and elizabeth.battropmedres.ac (Elizabeth Batty).

  • Primers
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
355
Last updated:
2024-09-05

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
309
Last updated:
2024-09-21

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Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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