Recent database update activity
2026-02-18:- Aeromonas spp.: 3 isolates; 3 genomes; 4 alleles; 2 MLST profiles
- Campylobacter jejuni/coli: 27 C. jejuni / C. coli cgMLST v1 profiles; 33 C. jejuni / C. coli cgMLST v2 profiles
- Campylobacter non-jejuni/coli: 20 isolates; 20 genomes; 6 alleles; 3 C. upsaliensis MLST profiles
- Citrobacter spp.: 4 isolates; 12 alleles; 1 MLST profile
- Enterobacter spp.: 1 isolate
- Escherichia spp.: 2 MLST (Achtman) profiles
- Glaesserella parasuis: 1 isolate
- Haemophilus influenzae: 286 isolates; 279 genomes; 9 alleles
- Klebsiella oxytoca: 6 isolates; 5 genomes; 1 MLST profile
- Lactococcus garvieae: 6 isolates; 6 genomes
- Neisseria spp.: 402 isolates; 1 genome; 3 alleles; 3 NG MAST v2.0 profiles
- Pseudomonas aeruginosa: 1 allele; 16 MLST profiles
- Ribosomal MLST: 1 rMLST profile
- Salmonella spp.: 2 alleles; 3 MLST profiles
- Staphylococcus aureus: 8 alleles
- Streptococcus pneumoniae: 1 cgMLST profile
- Treponema pallidum: 8 isolates; 8 MLST (Grillová) profiles
- Vibrio parahaemolyticus: 20 alleles
- Burkholderia pseudomallei: 4 MLST profiles
- Campylobacter jejuni/coli: 256 isolates; 280 alleles; 168 C. jejuni / C. coli cgMLST v1 profiles; 169 C. jejuni / C. coli cgMLST v2 profiles
- Chlamydiales spp.: 86 isolates; 15 alleles
- Enterobacter spp.: 1 genome; 1 MLST profile
- Enterococcus faecalis: 7 MLST profiles
- Enterococcus faecium: 1 MLST profile
- Escherichia spp.: 45,950 alleles; 4 MLST (Achtman) profiles
- Glaesserella parasuis: 1 genome; 1 MLST profile
- Klebsiella oxytoca: 1 genome
- Mycoplasma hyopneumoniae: 1 isolate; 2 alleles; 4 MLST profiles
- Neisseria spp.: 701 isolates; 1 N. gonorrhoeae cgMLST v1.0 profile; 1 N. gonorrhoeae cgMLST v2 profile; 15 N. meningitidis cgMLST v3 profiles
- Ribosomal MLST: 11 rMLST profiles
- Staphylococcus pseudintermedius: 22 isolates
- Streptococcus pneumoniae: 1 isolate; 1 genome; 5 alleles; 13 cgMLST profiles
- Streptococcus pyogenes: 1 cgMLST profile
- Vibrio parahaemolyticus: 21 alleles
- Aeromonas spp.: 22 isolates; 22 genomes; 14 alleles; 7 MLST profiles
- Burkholderia cepacia complex: 16 cgMLST profiles
- Campylobacter jejuni/coli: 30 isolates; 58 genomes
- Cronobacter spp.: 7 isolates; 32 alleles
- Enterococcus faecium: 1 isolate; 21 alleles
- Escherichia spp.: 6 alleles; 10 MLST (Achtman) profiles
- Haemophilus influenzae: 20 isolates; 19 genomes; 115 alleles; 19 cgMLST v1 profiles; 22 H. parainfluenzae cgMLST v1 profiles
- Mycoplasma genitalium: 7 alleles
- Neisseria spp.: 408 isolates; 15 genomes; 208 alleles; 1 MLST profile; 3 NG MAST v2.0 profiles; 30 N. meningitidis cgMLST v3 profiles
- Ribosomal MLST: 2 alleles
- Salmonella spp.: 2 MLST profiles
- Staphylococcus aureus: 19 MLST profiles
- Staphylococcus pseudintermedius: 52 isolates; 3 alleles; 34 MLST profiles
- Streptococcus pneumoniae: 7 isolates
- Streptococcus pyogenes: 1 isolate; 1 genome; 23 alleles; 3 MLST profiles
- Vibrio parahaemolyticus: 63 cgMLST profiles