Recent database update activity
2026-01-29:- Mycobacteria spp.: 2 alleles
- Burkholderia cepacia complex: 2 isolates
- Campylobacter jejuni/coli: 2 isolates; 2 alleles; 2 MLST profiles
- Citrobacter spp.: 8 isolates; 1 allele; 8 MLST profiles
- Clostridioides difficile: 10 isolates; 10 MLST profiles
- Cronobacter spp.: 3,128 alleles
- Enterobacter spp.: 3 isolates; 1 allele; 3 MLST profiles
- Enterococcus faecium: 1 isolate; 1 MLST profile
- Haemophilus influenzae: 49 isolates
- Mycobacteria spp.: 13,048 isolates; 41,270 alleles; 114 Core genome (H37Rv ref vs 19 finished species) profiles; 10,897 MTBC cgMLST profiles
- Mycoplasma hyopneumoniae: 3 isolates; 1 allele; 3 MLST profiles
- Neisseria spp.: 3 isolates; 793 N. gonorrhoeae cgMLST v1.0 profiles; 770 N. gonorrhoeae cgMLST v2 profiles
- Pasteurella multocida: 1 isolate; 1 Multiple host MLST profile
- Staphylococcus epidermidis: 216 isolates; 90 alleles
- Streptococcus pneumoniae: 12 isolates; 5 genomes; 97 alleles; 6 MLST profiles
- Streptococcus pyogenes: 2 isolates; 1 allele; 1 MLST profile
- Vibrio cholerae: 91 alleles; 1 cgMLST profile
- Acinetobacter baumannii: 186 alleles
- Aeromonas spp.: 12 isolates; 1 allele; 13 MLST profiles
- Burkholderia pseudomallei: 3 isolates; 2 alleles; 3 MLST profiles
- Candida albicans: 1 allele
- Candida tropicalis: 7 alleles; 12 MLST profiles
- Enterobacter spp.: 1 isolate
- Enterococcus faecium: 1 isolate; 1 allele; 1 MLST profile
- Escherichia spp.: 89,447 alleles
- Mycobacteria spp.: 1,742 isolates; 5 genomes; 47,850 alleles; 13,951 MTBC cgMLST profiles
- Neisseria spp.: 83 isolates; 19 genomes; 5 alleles; 1 MLST profile; 8 NG MAST v2.0 profiles; 997 N. gonorrhoeae cgMLST v1.0 profiles; 891 N. gonorrhoeae cgMLST v2 profiles
- Proteus spp.: 25 isolates
- Pseudomonas aeruginosa: 45 isolates
- Staphylococcus aureus: 1 MLST profile
- Staphylococcus epidermidis: 918 isolates; 101 alleles
- Streptococcus pneumoniae: 1 cgMLST profile
- Streptococcus suis: 2 isolates; 2 MLST profiles