Recent database update activity
2024-12-11:- Staphylococcus aureus: 5 isolates
- Aeromonas spp.: 1 isolate; 8 alleles; 1 MLST profile
- Bacillus cereus: 1 isolate; 1 MLST profile
- Campylobacter jejuni/coli: 47 isolates; 18 genomes; 38 alleles; 57 C. jejuni / C. coli cgMLST v1 profiles; 62 C. jejuni / C. coli cgMLST v2 profiles; 1 MLST profile
- Cronobacter spp.: 1 isolate; 1 genome; 4 alleles; 1 MLST profile
- Enterobacter cloacae: 2 isolates
- Escherichia spp.: 4 isolates; 9,559 alleles; 6 MLST (Achtman) profiles
- Glaesserella parasuis: 14 isolates; 14 genomes; 14 MLST profiles
- Mycoplasma genitalium: 1 isolate; 1 MG191-MG309 typing profile
- Neisseria spp.: 11 isolates; 11 genomes; 219 alleles; 9 N. meningitidis cgMLST v3 profiles
- Pasteurella multocida: 64 cgMLST (draft) profiles
- Ribosomal MLST: 75 alleles; 93 rMLST profiles
- Salmonella spp.: 1 MLST profile
- Serratia spp.: 1 isolate; 12 alleles; 24 MLST profiles
- Staphylococcus aureus: 126 isolates; 2 alleles; 14 MLST profiles
- Streptococcus agalactiae: 10 isolates
- Streptococcus pneumoniae: 183 isolates; 2 genomes; 28 alleles; 136 cgMLST profiles; 144 MLST profiles
- Vibrio cholerae: 5 MLST profiles
- Bacillus cereus: 7 B. anthracis cgMLST profiles; 1,842 B. cereus cgMLST profiles
- Campylobacter jejuni/coli: 650 isolates; 68 genomes; 1,110 alleles; 40 C. jejuni / C. coli cgMLST v1 profiles; 37 C. jejuni / C. coli cgMLST v2 profiles; 19 MLST profiles
- Enterobacter cloacae: 2 genomes; 2 alleles; 2 MLST profiles
- Escherichia spp.: 2 alleles; 2 MLST (Achtman) profiles
- Glaesserella parasuis: 5 alleles
- Haemophilus influenzae: 54 alleles; 758 cgMLST v1 profiles
- Helicobacter pylori: 91 alleles
- Neisseria spp.: 43 isolates; 118 alleles; 16 NG MAST v2.0 profiles; 95 N. meningitidis cgMLST v3 profiles
- Pseudomonas aeruginosa: 1 isolate; 1 genome; 2 alleles; 2 MLST profiles
- Ribosomal MLST: 57 alleles; 116 rMLST profiles
- Salmonella spp.: 2 alleles; 2 MLST profiles; 39 SalmcgMLST v1.0 profiles
- Staphylococcus aureus: 85 isolates; 12 genomes; 695 alleles; 45 MLST profiles
- Streptococcus suis: 33 isolates; 19 MLST profiles
- Vibrio parahaemolyticus: 3 isolates; 3 genomes