Recent database update activity
2024-10-22:- Burkholderia pseudomallei: 109 isolates; 106 genomes; 3 MLST profiles
- Campylobacter jejuni/coli: 4,589 isolates; 1 C. jejuni / C. coli cgMLST v1 profile; 2 C. jejuni / C. coli cgMLST v2 profiles; 1 MLST profile
- Cronobacter spp.: 2 isolates; 2 genomes; 984 alleles; 2 MLST profiles
- Enterococcus faecalis: 1 allele
- Enterococcus faecium: 3 isolates; 3 genomes; 137 alleles; 3 MLST profiles
- Escherichia spp.: 33,528 alleles; 79 MLST (Achtman) profiles
- Neisseria spp.: 3,803 isolates; 1 genome; 1,259 alleles; 2 MLST profiles; 22 NG MAST v2.0 profiles; 1 N. meningitidis cgMLST v3 profile
- Pseudomonas aeruginosa: 3 alleles
- Ribosomal MLST: 21 alleles; 28 rMLST profiles
- Salmonella spp.: 1 MLST profile
- Streptococcus agalactiae: 543 isolates
- Streptococcus pneumoniae: 188 isolates; 188 genomes; 14 alleles; 19 cgMLST profiles; 10 MLST profiles
- Vibrio parahaemolyticus: 4 alleles
- Acinetobacter baumannii: 1 isolate; 1 MLST (Oxford) profile
- Bacteroides fragilis: 10 isolates; 9 MLST profiles
- Campylobacter jejuni/coli: 4 genomes; 317 alleles; 12 C. jejuni / C. coli cgMLST v1 profiles; 15 C. jejuni / C. coli cgMLST v2 profiles; 6 MLST profiles
- Escherichia spp.: 178 alleles; 127 MLST (Pasteur) profiles
- Haemophilus influenzae: 1 allele
- Klebsiella aerogenes: 72 isolates; 72 MLST profiles
- Mammaliicoccus sciuri: 3 alleles
- Neisseria spp.: 133 isolates; 4 genomes; 11 alleles; 1,995 N. gonorrhoeae cgMLST v1.0 profiles; 1,670 N. gonorrhoeae cgMLST v2 profiles; 15 N. meningitidis cgMLST v3 profiles
- Salmonella spp.: 3 alleles; 2 MLST profiles
- Serratia spp.: 620 MLST profiles
- Streptococcus agalactiae: 23 isolates
- Streptococcus pneumoniae: 6 isolates; 6 genomes; 30 alleles
- Vibrio parahaemolyticus: 76 cgMLST profiles
- Anaplasma phagocytophilum: 2 isolates; 40 alleles; 6 MLST profiles
- Clostridium perfringens: 14 isolates; 10 MLST profiles
- Neisseria spp.: 226 isolates; 1 allele; 36 MLST profiles
- Salmonella spp.: 9,500 alleles
- Streptococcus suis: 1 allele