Vibrio parahaemolyticus

Source of isolates submitted to the Vibrio parahaemolyticus database

Submit

The MLST scheme hosted in this database was developed by Narjol Gonzalez-Escalona and colleagues at the FDA, USA. It is described in González-Escalona et al. 2008 J Bacteriol 190:2831-40.

Primers

The cgMLST scheme is described in González-Escalona et al. 2017 J Clin Microbiol 55:1682-1697.

Database curated by narjol.gonzalez-escalonafda.hhs.gov (Narjol Gonzalez-Escalona).

The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Genome collection

A subset of records within the isolate database may contain genomes assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.