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PubMLST
Public databases for molecular typing
and microbial genome diversity

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  3. Neisseria spp.

Neisseria spp.

Source of isolates submitted to the Neisseria spp. database
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  • Curation and management
  • Target genes/antigens
    • MLST
    • PorA variable regions
    • FetA variable region
    • porB
    • fHbp
    • NHBA
    • NadA
  • Meningococcal Deduced Vaccine Antigen Reactivity (MenDeVAR)
The preferred citation for this website is:

Jolley et al. Wellcome Open Res 2018, 3:124 [version 1; referees: 2 approved].

Typing

The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).

Allele sequences:
1,997,609
Last updated:
2023-03-22

Isolate collection

The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.

Isolates:
91,358
Last updated:
2023-03-22

Genome collection

Many of the isolate records in this database contain genome assemblies. You can access these from the isolate database by filtering on sequence bin size in a query.

A subset of these are in genome libraries representing coherent collections of records.

Genomes:
48,568
Last updated:
2023-03-22

Contact

Get in touch with us if you have any comments or suggestions concerning the website and the databases.

Cite us

Please cite Jolley et al. 2018 Wellcome Open Res 3:124 if you use data or analysis from PubMLST in your publications.

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Wellcome Trust

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